Monday, October 20, 2008

Human evolution within a historical timeframe

The environment is everything to human evolution. In regards to humans, the concept must encapsulate both physical and cultural aspects of environments. Various environs provide a testing ground which all mutations must face if they are to graduate to the level of a polymorphism. This would be any variation physical, cultural, and behavioral within a population that is expressed 1% or above within a population. If a polymorphism is significantly beneficial in the face of certain pressures it will be selected for. Especially potent advantages could eventually become ubiquitous. An example of such a polymorphism would be the foxp2 gene found in modern humans. This gene is so important to language that a variation causes syntax malfunction. This particular adaptation functions both within the evolutionary environment, where an adaptive communication set is key to survival in areas thick with predators, and is culturally necessary where mate access could depend on an ability to converse meaningfully. Surely our modern environment has only replaced predators with education centers and conversing meaningfully with superficial flirting. Even those without verbal communication depend upon sign language in order to express themselves in all the ways we are familiar with vocally.

At the core of success is the level of selection pressure present within the population. Selection is a mechanism measured by the individual fitness derived from traits and behaviors. On a larger scale, a population can also undergo pressures that shift the direction of allelic distribution. If we are to turn this concept towards punctuated events, such as pathogen driven bottlenecks, we can observe relatively quick changes in the allelic frequencies of a population. Survival of the Sickest outlines just such an event when describing the prevalence of hemachromatosis in northern European nations. Pathogens can create extremely harsh selection pressures which produce a quick change. Evolution does not always take this path though; biological changes are produced over a longer period of time in relation to cultural events. Lactose persistence is a salient example of such an event occurs after the Holocene and the uptake of animal domestication and agriculture.

Lactose is literary milk sugar and the innate ability to gain caloric benefit from this substance generally ceases at a certain age. A high level of the pancreatic enzyme lactase is requisite for this process to occur, and production of this enzyme is under genetic control. The presence of this enzyme in most infants is high until weaning occurs. If milk is consumed after weaning the undigested portion can cause abdominal pain. In mammals it is normal to become intolerant. Cultural centers where milk is derived from domesticated animals this is not the case. Indeed most Western nations tend to supplement their diet with cow’s milk without hesitation.

This genetically determined ability is clinal and clearly a product of evolution within our species. Northern portions of Europe, Africa, and Asia all demonstrate this ability where unprocessed milk is consumed. This pattern a gradually decreases as one moves from these centers into other environments with separate selection pressures. For instance, moving South and East across Europe will result in a decline in lactose persistence. In native populations with no admixture, such as Australia and Oceania, we see a 100% lack of lactose persistence (Mielke et al. 2008). This cline is an example of an evolutionary trend within the past 10,000 years.

as pastoralism activity became increasingly beneficial over the millennia. In other words those individuals who could digest milk were at a selective advantage over those who could not.

This pattern makes sense because milk promotes the uptake of calcium and aids in the normal bone growth. Children that could to digest and use milk would not run the risk of getting rickets in latitudes where the sun is less intense. Those individuals living in desert environments would be better able to make use of the milks water content, thus increasing their fitness. Studies on this ability project that the strength the selection factor would need to be about 4% with a starting frequency of .001% in non-European areas. Current levels of lactase persistence in Europe would need a selection pressure of 5-7% for it to be in line with domestication diffusion 3,000 years ago (Mielke, James et al. 2006). Although this is certainly one of the more widespread evolutionary patters observed in our time, it is not the only one.

Further allelic alterations can be seen in malarial environments. Adaptations of this short are to be found—but not limited to—the Mediterranean. The enzyme deficiency of Glucose-6-Phosphate-Dehydrogenase provides people with a certain amount of protection from the parasite which causes malaria. The function of this enzyme helps prevent oxidization of cells when they metabolize. Lack of this enzyme can result in certain dietary restrictions due to the provocation of negative reactions and has therefore been called favism (Mielke, James et al. 2006). This condition is beneficial in malaria stricken environments because it is thought to expose the parasite within infected cells. This occurs because cells under stress are more sensitive to the hydrogen peroxide being produced by the parasite, which allows for the agents of the immune system to identify and destroy the infection. On an interesting historical note, the Mediterranean region and the condition could be intimately tied to actions of ancient Rome 2,400 years ago.

As O’Sullivan and colleagues point out in their paper, “Deforestation, Mosquitoes, and Ancient Rome: Lessons for Today” an increased population, an open sewage system, and a sudden alteration of a landscape allows for the introduction of new disease vectors. The act of deforestation for agriculture expansion allowed for the build-up of the Pontine marshland which provided the perfect grounds for mosquitoes to breed (O’Sullivan et al, 2008). Although the genetic impacts of this behavior were not outlined within the paper, practices such as these provide a plausible explanation for the levels of the G6PD deficiency we see in the area. The idea that large, ancient population center is found in this region in conjunction with an artificial malarial environment is too coincidental to ignore. This event could have certainly heightened the frequency of an already present polymorphism.

Perhaps one of the more interesting and overlooked aspects of post-agricultural effects on humans is the idea of becoming domesticated. Perhaps it has to do with the stigma of the word “domesticate”. To be a domesticated animal makes us think of penned creatures being raised for consumption. Or it might be tied to the notion that humans are somehow beyond the reach of environmental selection. After all, we often see ourselves as the ones that alter our environments, not the other way around. We do understand the process of domestication through various death assemblages throughout history. In the paper, “Human Domestication Reconsidered” a number of skeletal changes are outlined in regards to domestication:

(1)change in body size, initially to smaller, with decreasing skeletal robusticity; (2) reduction in cranial capacity; (3) shortening of the facial region of skull, including jaws, sometimes associated with tooth crowding and maleruption and/or reduction in size of cheek teeth; (4) reduction in sexual dimorphism; and (5) greater diversity in shape and size of horns (in cattle, sheep, and goats). Domestication changes affecting only soft tissues, body biochemistry, and/or behavior and therefore archaeologically invisible in any direct form may include the following: (6) increasing variation in coat colour and hair structure; (7) increasing fat storage (subcutaneous and intramuscular); (8) enhanced physiological performance, including lactation; (9) precocity, extended breeding seasons, and greater sexual stimulation; (10) retention of juvenile behaviours into adulthood; (11) greater litter size and frequency of multiple births; (12) reduction in motor activity; (13) reduction in information acquisition systems; (14) reduction in intraspecific aggression, especially in males (though this may be attenuated defensive behaviour); and (15) increased docility as part of reduced environmental responsiveness. (Leach, 2003)

With this list in mind, Dr. Leach examines the modern human condition, pointing out that this shift is present within humans during the Pleistocene to Holocene shift. One must only think of the Nubian shift from hunting and gathering to agriculture to find an example of reduced cranial robusticity (Larsen, 1999). Whether this exemplifies domestication is another question all together. An important factor considered within this paper is that human built environments, such as the ones humans have been perfecting since the sedentary lifestyle allowed for permanent domiciles, has acted upon our biology in a way not unlike guided selection. The only hesitation to ascribe domestication to the modern human condition is the need for a significant emphasis on preserving certain stock. As we have observed historically there has been a special emphasis on this with the Eugenics movement in western nations at the beginning of the 20th century. Besides being a perversion of evolutionary theory, the concept is largely bankrupt and we have not seen eugenics in a significant level since these early attempts.

When just a few examples of biological variation are considered, we can easily find results of selective pressures that are surely evolutionary events. These microevolutinary shifts may not be the dramatic evidence we observe in the fossil record from Homo erectus to Homo sapiens, but that make them no less significant. If we keep in mind that the environment determines whether a variant is good or bad, we can place G6PD deficiency in a good category where malaria is found. We can also place lactose non-persistence in the “bad category within a pastorally dependent culture. Whatever the category we ascribe the evolutionary examples provided we must recognize that they are present, and that they are representative of our constantly shifting environments both physically and culturally.

Larsen, C.S. 1999. Bioarchaeology: Interpreting Behavior From the Human Skeleton.

Cambridge University Press, Cambridge.

Leach, H. M. 2003. Human Domestication Reconsidered. Current Anthropology. 44:

349-368.

Mielke, J.H., L.W. Konigsberg., J.H. Relethford. 2006. Human Biological Variation. Oxford

University Press, New York.

O'Sullivan, L., A. Jardine, et al. 2008. "Deforestation, mosquitoes, and ancient Rome: lessons for today”. (Biology in History)(Report)." BioScience 58(8): 756(5).

Tuesday, October 14, 2008

This is awesome.

So this is a succinct information dense video that handles a common question.

Friday, October 10, 2008

Palin and the prize.

So the news about V.P. hopeful Sarah Palin hit the news just moments ago. She is guilty of abuse of power. This, if nothing else, suggests that McCain didn’t really vet as much as he could’ve. I suppose they will spin this information to a political tune, and it will stick like eggs to Teflon. Still, this is a bit of foreshadowing for any who aren’t paying attention. You can read the complete article here:  

http://news.bbc.co.uk/2/hi/americas/7662820.stm 

Wednesday, October 8, 2008

Thoughts on the economy and political poistioning.

So, perhaps a plug page wasn’t the smartest thing for the second entry into this Blog. Apparently it is something frequent in the bot driven world of search engine destruction.
From a mythological perspective, the past financial events have produced our current Nemesis. It seems appropriate the steady dismantling of the infrastructure we built after the last great crash came out like a badly played game of Jenga. It isn’t really a mystery that our methods were ill advised, that the hands off system that couldn’t provide for us in the 19th century would do the same in the 21st. Some people are still shocked. Mainly this is my generation. I am not surprised at this. Before a couple of weeks ago many people could rattle off the last six MVP’s of the superbowl before they could draw a line from one point of history to another. More people can tell you intimate details of the current American Idol before they can relate McCain to Hoover on fundamentals. This is also the generation of people that are currently taking the reins of the American economy.
I personally know more liberal arts graduates, drama graduates, and English graduates than I do science majors. This is a sad statement since I am a science major and can recognize all of my classmates. The difference is, we travel through the curriculum together. There aren’t that many classes for us. If you wanted to find a Literature or humanities credit though, chances are you have the run of times and teachers.
We’re people, and we’re pretty good at pointing the finger at others when things go wrong. As of late, the politicians have been pointing towards one another. Some people are pointing towards what little remained to constrict the free market, claiming that this would’ve never occurred had they truly been able to run wild. The simple fact that this didn’t occur is my silver lining. It’s even worse that I have to find a hypothetical for comfort.
On the other side of the coin, Democrats seem to pointing the finger squarely towards the red. This seems appropriate to some degree, but they’re still rich enough. This would really seem to be more of an elected Oligarchy than any sort of democratic society. I think that is another thing that people aren’t aware of. They don’t really run this nation, but they let politicians tell them they will. I am not sure why this is. This is probably because we’re happy enough with a flat-screen television, a game on television, beer in our hand, and Chili-Fritos in our bowl.
Our leaders have entered the realm of the public, and have since Jackson told us it was really up to us. It really isn’t. At the best of times this is a Republic. Which is fine, I don’t want the common man in the Whitehouse. I think that might be what has gone wrong in the last few decades. Tennyson wrote "I mete and dole unequal laws unto a savage race, that hoard, and sleep, and feed, and know not me." Ulysses complaint was that his public was unaware of his presence.

Monday, October 6, 2008

Spammer?

I got flagged as a spammer Blog. It's just midterms. I'll return to this after I am done filling my mind with everything they want me to learn. I've had plenty of ideas. The state of education and our culture being one of them. I had a great conversation today about just the topic. I'll post here soon.

Thursday, October 2, 2008

Time to plug

Besides the few people I have mentioned from my past (one), there are a number of other sources of inspiration I would like to take a moment to point out. Most of these people are literary sources. There are of course many others out there, but these are the few that I can recall without hitting my bookshelves. I would also like to note that my ideas in no way reflect their own: 

   

Brain Green: http://www.superstringtheory.com/people/bgreene.html 

Robi Sen: http://www.therobisen.com/blog 

Steven Novella: http://www.theness.com/neurologicablog 

The Nonprophets: http://www.nonprophetsradio.com 

David Hume: http://en.wikipedia.org/wiki/David_Hume 

The Skeptics Guide to The Universe: http://www.theskepticsguide.org 

Karl Popper: http://plato.stanford.edu/entries/popper 

Peter Watson: http://en.wikipedia.org/wiki/Peter_Watson_(business_writer) 

Richard Dawkins: http://richarddawkins.net 

Sam Harris: http://www.samharris.org 

Benjamin Franklin: http://en.wikipedia.org/wiki/Benjamin_Franklin 

Thomas Jefferson: http://en.wikipedia.org/wiki/Thomas_Jefferson 

Samuel Clemens: http://en.wikipedia.org/wiki/Mark_Twain 

Thomas Hobbes: http://en.wikipedia.org/wiki/Thomas_Hobbes 

Jonathan Glover: http://en.wikipedia.org/wiki/Jonathan_Glover 

   

Yes, I did use Wikipedia as a reference for these people. I don’t do this in papers or anything, but it still gives a good overview of people that would otherwise have no page. All of these people, in one way or another has influenced my thought type. Most of these people have a single thing in common in that they build upon the ideas of others and they think for themselves. I suppose that is really the goal here. I also think a good deal of them are scientists in one fashion or another. They certainly are imbued with the clarity of thought required.  

Wednesday, October 1, 2008

An introduction

I suppose this is a rant a long time coming. There was a time in my life when I was so far gone that I can’t even imagine where I would be now if I hadn’t changed. The thing I can’t really place is what initiated the change?  

The shift I am talking about is my current secular mindset. I am fully aware of the craziest things I used to think. The ideas I harbored about myself and the world. They were off the beaten path. They were out of the norm. What they definitely weren’t though is any more insane than a group of politically motivated idiots that thinks the world is 6,000 years old or less. They simply have better representation. 

If I were to make a confession about the things I used to believe, I could think of a time when I didn’t question it. I suppose this was the impetus for my own personal change. The time I began to question things that seemed self-evident. If anything started me on this path, it was my desire to read over anything else. Conflicting ideas are a great battlefield for complacent acceptance to die.  

I can remember being a questioning child. But, like all children, I can also remember the security of trusting authority. I was, at times, also known to be a stubborn and impudent child. I think the latter has hindered me in my teenage years, but served me in my adult years. Equally true is my trust in authority. I would think this is true for all people. The only change would be what we consider authority.  

Authority, for me, used to be anyone older than myself. From there, it was anyone who put enough effort into writing a book. Thereafter, it was anyone who could demonstrate a sort of competency of facts. This final point is where my world actually collapsed. I suppose it is a small thank you to dedicate my current placement in the world to a single person. I met Robi Sen through a network of what I would now consider the clinically insane. It was a stroke of luck that he was the one that contacted me.  

Robi and I practiced martial arts together for a little more than two years. Originally I respected him for his command of the martial arts he taught me. In time though, I came to respect him for his mental acuity, and his ability to dissect situations into components that functioned within the real world. He mentioned two things that have stuck with me to this day. The first, “We do the things that are most difficult for us, so when something difficult arrives, it is not such a big deal. The second, “Question everything everyone tells you. Even what I say.” It was this last bit that caught me off guard the most.  

Robi moved away to continue the natural arc of his life. A year after that, he came back for a time. I had taken everything he had said to heart. I had learned a lot. And, more importantly, I had continued to read. This time though I wasn’t reading fiction, I wasn’t reading half-baked ideas of some idiot claiming to understand the secrets of life, I was reading physics. I was learning math. I was reading philosophy. I came to understand the importance of history. Robi had provided some of the books, but the others I sought out on my own. When I talked to Robi that time, my final bit of misunderstanding broke.  

We discussed energy, and its importance in martial arts. I had never really comprehended what he was getting at when we’d started training, but I knew now. I had, through all of this, held a special place for something extraordinary outside of what could be. I had set aside a place where gnomes could hide, or energy fields, or a teapot in space. Robi told me everything that occurs, whether you could measure it or not was physics. Everything we observe obeys the laws of the universe. It is our misunderstanding of the situation that is imperfect.  

As I’ve progressed through my education, I have found this to be true. Science has opened up true wonder to my eye. The amount of innovation it takes to trick out the secrets of a parabolic arc gone awry is simply astounding. When I began looking at why people are what they are, I wanted to know their potential. I think I understand that now. Our most important legacy has been the expansion of knowledge over generations. This is something that has built into a torrent. What is even more interesting is that when you reach a new cusp, you are still staring into a vast wasteland of what we don’t know. This is surely the sentiment that Karl Popper was getting at when he said, “Our knowledge can only be finite, while our ignorance must remain ignorant.” Our potential and limitations lie within this statement. Our path can only be one of science, because it is the only system we have to truly understand what functions within the world we live in. It is the only system that checks itself, and much like math, it is only limited by the people that engage in the process of solution.